HumanMethylation450

Brain-Blood
Brain-Saliva
Brain-Blood-Saliva

MethylationEPIC

Brain-Blood
Brain-Saliva
Brain-Buccal
Brain-Blood-Saliva- Buccal

"By CpG" provides methylation data for input CpG site name across 13 samples and four tissues (brain, blood, saliva and buccal). It also provides summary statistics, including average methylation of four tissues (brainMean, bloodMean, salivaMean and buccalMean) and spearman correlation and p-values for each pair of tissues. The PDF image plots the CpG site methylation level across samples by tissues. The top of the image provides the spearman correlation and p-values of methylation level for each pair of tissues.

"By Gene" provides methylation data for all CpG sites of input gene across 13 samples and four tissues (brain, blood, saliva and buccal). It also provides summary statistics for each CpG site within the gene, including average methylation of four tissues (brainMean, bloodMean, salivaMean and buccalMean) and spearman correlation and p-values for each pair of tissues. The PDF image plots the average methylation level across CpG sites by tissues. The top of the image provides the spearman correlation and p-values of methylation level across all samples and CpG sites within the gene for each pair of tissues.

"By Interval" provides methylation data for all CpG sites within input genomic interval (Hg19) across 13 samples and four tissues (brain, blood, saliva and buccal). It also provides summary statistics for each CpG site within the interval, including average methylation of four tissues (brainMean, bloodMean, salivaMean and buccalMean) and spearman correlation and p-values for each pair of tissues. The PDF image plots the average methylation level across CpG sites by tissues. The top of the image provides the spearman correlation and p-values of methylation level across all samples and CpG sites within the interval for each pair of tissues.